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Glycoside hydrolase BT_0986
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 15% (w/v) PEG 550 MME, 15% (w/v) PEG 20000, 0.25 M rahmnose, 50mM hepes
and 50 mm MOPS pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.63 53.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.291 α = 90 b = 85.758 β = 98.78 c = 120.87 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.913 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.17 99.7 0.076 0.996 9.7 3.7 380421 101961 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.1 0.653 0.671 1.7 3.2 4655
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 49.17 96922 5016 99.72 0.17543 0.17388 0.1826 0.20512 0.2133 RANDOM 30.217
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.07 -0.39 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.735 r_dihedral_angle_4_deg 15.48 r_dihedral_angle_3_deg 12.454 r_dihedral_angle_1_deg 6.431 r_long_range_B_refined 6.193 r_long_range_B_other 6.023 r_angle_refined_deg 1.523 r_mcangle_it 1.061 r_mcangle_other 1.061 r_scangle_other 1.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.735 r_dihedral_angle_4_deg 15.48 r_dihedral_angle_3_deg 12.454 r_dihedral_angle_1_deg 6.431 r_long_range_B_refined 6.193 r_long_range_B_other 6.023 r_angle_refined_deg 1.523 r_mcangle_it 1.061 r_mcangle_other 1.061 r_scangle_other 1.027 r_angle_other_deg 0.954 r_scbond_it 0.596 r_scbond_other 0.596 r_mcbond_it 0.595 r_mcbond_other 0.595 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8271 Nucleic Acid Atoms Solvent Atoms 968 Heterogen Atoms 3
Software Software Software Name Purpose XDS data reduction Aimless data scaling SHELXCD phasing SHELXDE phasing Coot model building REFMAC phasing REFMAC refinement