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Single Amino Acid Variant of Human Mitochondrial Branched Chain Amino Acid Aminotransferase 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.5 293 0.2 M Sodiumfluoride, 0.1 M Bis Tris propane pH 6.5, 20% w/v Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 2.59 52.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.032 α = 90 b = 84.032 β = 90 c = 105.446 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28 99.7 11.8 9.7 57390
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.6 27.52 54393 2912 99.66 0.13052 0.1279 0.1426 0.17939 0.1872 RANDOM 28.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.2 0.2 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.82 r_sphericity_free 29.486 r_sphericity_bonded 17.965 r_dihedral_angle_4_deg 16.156 r_dihedral_angle_3_deg 13.275 r_scangle_other 8.025 r_long_range_B_refined 7.228 r_long_range_B_other 7.228 r_scbond_it 6.817 r_scbond_other 6.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.82 r_sphericity_free 29.486 r_sphericity_bonded 17.965 r_dihedral_angle_4_deg 16.156 r_dihedral_angle_3_deg 13.275 r_scangle_other 8.025 r_long_range_B_refined 7.228 r_long_range_B_other 7.228 r_scbond_it 6.817 r_scbond_other 6.816 r_rigid_bond_restr 6.298 r_dihedral_angle_1_deg 5.926 r_mcangle_other 5.305 r_mcangle_it 5.298 r_mcbond_it 4.513 r_mcbond_other 4.497 r_angle_refined_deg 1.816 r_angle_other_deg 0.875 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2901 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing