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Single-shot pink beam serial crystallography: Proteinase K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5AVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 1.6M MgSO4, 10 mM CaCl2, 100 mM CHC buffer pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.18 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.3 α = 90 b = 68.3 β = 90 c = 108.3 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD RAYONIX MX340-HS 2016-07-10 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 1.1-1.3 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 100 57.9 0.1 18.5 3.7 9197 0.0186601051545
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.31 26.06 15.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5AVJ 2.21013789926 44.1083574029 0.416332133786 8341 792 62.1303538175 0.157478947888 0.153604213342 0.194518100148 0.178 6.34427693799
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.97717287148 f_angle_d 0.570602819403 f_chiral_restr 0.0403263001001 f_bond_d 0.00211067614685 f_plane_restr 0.00208668177934
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 322 Heterogen Atoms 30
Software Software Software Name Purpose PHENIX phasing PHENIX refinement Precognition/Epinorm (RenzResearch) data reduction