☰ Navigation Tabs
Human Leukocyte Antigen presenting ILGKFLHRL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4I4W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M ammonium sulphate, 0.1 M Tris pH 7.5, 25% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.58 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.2 α = 90 b = 74.87 β = 90 c = 125.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.772 49.2 100 0.105 0.12 0.044 10.5 7.2 46011 46011
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.772 1.82 100 0.718 1 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4I4W 1.772 48.16 43626 2319 99.95 0.1729 0.1707 0.1804 0.2137 0.2183 RANDOM 27.731
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.98 0.98 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.215 r_dihedral_angle_4_deg 17.572 r_dihedral_angle_3_deg 15 r_dihedral_angle_1_deg 6.647 r_angle_refined_deg 1.983 r_angle_other_deg 1.101 r_mcangle_it 1.096 r_mcbond_it 0.693 r_mcbond_other 0.693 r_chiral_restr 0.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.215 r_dihedral_angle_4_deg 17.572 r_dihedral_angle_3_deg 15 r_dihedral_angle_1_deg 6.647 r_angle_refined_deg 1.983 r_angle_other_deg 1.101 r_mcangle_it 1.096 r_mcbond_it 0.693 r_mcbond_other 0.693 r_chiral_restr 0.125 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3169 Nucleic Acid Atoms Solvent Atoms 347 Heterogen Atoms 94
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction