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Crystal Structure of eiF4E from C. melo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 sodium potassium tartrate
Crystal Properties Matthews coefficient Solvent content 2.33 47.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.746 α = 90 b = 108.957 β = 90 c = 122.143 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.98 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 81.31 99.3 0.103 7.9 3.7 39619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 97.8 0.384 2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 30 37628 1985 99.21 0.1881 0.18671 0.1921 0.21392 0.219 RANDOM 50.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.16 1.95 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.525 r_dihedral_angle_4_deg 23.861 r_dihedral_angle_3_deg 15.377 r_dihedral_angle_1_deg 6.802 r_long_range_B_refined 5.897 r_long_range_B_other 5.886 r_scangle_other 4.08 r_mcangle_other 2.846 r_mcangle_it 2.845 r_scbond_it 2.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.525 r_dihedral_angle_4_deg 23.861 r_dihedral_angle_3_deg 15.377 r_dihedral_angle_1_deg 6.802 r_long_range_B_refined 5.897 r_long_range_B_other 5.886 r_scangle_other 4.08 r_mcangle_other 2.846 r_mcangle_it 2.845 r_scbond_it 2.582 r_scbond_other 2.582 r_angle_refined_deg 1.951 r_angle_other_deg 1.917 r_mcbond_it 1.796 r_mcbond_other 1.792 r_chiral_restr 0.131 r_bond_refined_d 0.019 r_gen_planes_refined 0.013 r_bond_other_d 0.012 r_gen_planes_other 0.011 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5708 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement SCALA data scaling XDS data reduction PDB_EXTRACT data extraction XSCALE data scaling PHASER phasing