☰ Navigation Tabs
Crystal structure of NtrX from Brucella abortus processed with the CrystalDirect automated mounting and cryo-cooling technology
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 3.36 M sodium formate
Crystal Properties Matthews coefficient Solvent content 3.32 62.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.778 α = 90 b = 191.228 β = 90 c = 111.85 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9762 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50.02 99.8 0.152 0.167 0.07 8 5.6 67838
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.5 0.226 0.8 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 50.02 64403 3401 99.67 0.22951 0.22736 0.2326 0.26896 0.2727 RANDOM 58.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.52 -0.93 3.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.301 r_dihedral_angle_4_deg 17.713 r_dihedral_angle_3_deg 14.385 r_long_range_B_other 9.31 r_long_range_B_refined 9.306 r_scangle_other 6.779 r_dihedral_angle_1_deg 5.897 r_mcangle_it 5.874 r_mcangle_other 5.874 r_scbond_it 4.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.301 r_dihedral_angle_4_deg 17.713 r_dihedral_angle_3_deg 14.385 r_long_range_B_other 9.31 r_long_range_B_refined 9.306 r_scangle_other 6.779 r_dihedral_angle_1_deg 5.897 r_mcangle_it 5.874 r_mcangle_other 5.874 r_scbond_it 4.189 r_scbond_other 4.188 r_mcbond_it 3.806 r_mcbond_other 3.805 r_angle_refined_deg 1.56 r_angle_other_deg 0.981 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6822 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXCD phasing