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R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5M2O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 292 0.2 M calcium acetate, 0.2 M sodium cacodylate trihydrate, 18% w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.33 47.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.61 α = 90 b = 64.49 β = 116.72 c = 47.67 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.98402 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 42.58 97.5 0.115 0.991 9.3 4.2 26498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 84.6 0.287 0.834 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5M2O 1.7 42.58 25318 1163 97.36 0.135 0.134 0.1487 0.1566 0.1512 RANDOM 11.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 0.03 -0.1 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.974 r_dihedral_angle_4_deg 24.795 r_dihedral_angle_3_deg 10.033 r_dihedral_angle_1_deg 6.258 r_mcangle_it 1.438 r_angle_refined_deg 1.42 r_mcbond_it 0.845 r_mcbond_other 0.845 r_angle_other_deg 0.772 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.974 r_dihedral_angle_4_deg 24.795 r_dihedral_angle_3_deg 10.033 r_dihedral_angle_1_deg 6.258 r_mcangle_it 1.438 r_angle_refined_deg 1.42 r_mcbond_it 0.845 r_mcbond_other 0.845 r_angle_other_deg 0.772 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1641 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 21
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing