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Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NAO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 NULL
Crystal Properties Matthews coefficient Solvent content 2.3 46.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.25 α = 90 b = 100.17 β = 90 c = 148.88 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 47.47 99.7 0.151 0.996 8.7 5.9 31397 34.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 99.5 1.413 0.539 1.3 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NAO 2.2 47.47 29876 1521 99.62 0.2191 0.2178 0.2443 0.2164 RANDOM 50.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.56 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.595 r_dihedral_angle_4_deg 15.102 r_dihedral_angle_3_deg 14.794 r_dihedral_angle_1_deg 6.218 r_mcangle_it 2.396 r_mcbond_it 1.567 r_mcbond_other 1.565 r_angle_refined_deg 1.378 r_angle_other_deg 0.942 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.595 r_dihedral_angle_4_deg 15.102 r_dihedral_angle_3_deg 14.794 r_dihedral_angle_1_deg 6.218 r_mcangle_it 2.396 r_mcbond_it 1.567 r_mcbond_other 1.565 r_angle_refined_deg 1.378 r_angle_other_deg 0.942 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4383 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 36
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction