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Cytochrome c in complex with phosphonato-calix[6]arene
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 3.15M ammonium sulfate
100 mM sodium citrate pH 5.0
Crystal Properties Matthews coefficient Solvent content 3.22 61.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.57 α = 90 b = 54.57 β = 90 c = 208.01 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9786 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 69.34 100 0.12 0.998 13.1 9.1 30379 20
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.9 1.9 0.459 8.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 52.78 28686 1595 99.97 0.1701 0.1685 0.1789 0.1994 0.2062 RANDOM 27.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.16 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.538 r_dihedral_angle_3_deg 13.821 r_dihedral_angle_4_deg 9.54 r_dihedral_angle_1_deg 5.9 r_angle_refined_deg 1.796 r_mcangle_it 1.448 r_angle_other_deg 1.016 r_mcbond_it 0.925 r_mcbond_other 0.895 r_chiral_restr 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.538 r_dihedral_angle_3_deg 13.821 r_dihedral_angle_4_deg 9.54 r_dihedral_angle_1_deg 5.9 r_angle_refined_deg 1.796 r_mcangle_it 1.448 r_angle_other_deg 1.016 r_mcbond_it 0.925 r_mcbond_other 0.895 r_chiral_restr 0.114 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1687 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 255
Software Software Software Name Purpose MOSFLM data collection Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing