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Structure of Human Neurolysin (E475Q) in complex with neurotensin peptide products
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I1I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 0.1M Bis-Tris-propane, 11% PEG 3350, 10% glycerol, 0.2M potassium thiocyanate
Crystal Properties Matthews coefficient Solvent content 2.7 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.329 α = 90 b = 131.329 β = 90 c = 195.229 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.968 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.6 0.01 0.982 12.2 5.9 46686
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.79 99.2 0.57 0.632 2.9 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1I1I 2.7 50 44361 2301 98.07 0.21813 0.21558 0.2173 0.26786 0.2685 RANDOM 55.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.45 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.683 r_dihedral_angle_4_deg 14.209 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 5.461 r_long_range_B_refined 2.632 r_long_range_B_other 2.631 r_mcangle_it 1.459 r_mcangle_other 1.459 r_angle_refined_deg 1.068 r_scangle_other 1.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.683 r_dihedral_angle_4_deg 14.209 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 5.461 r_long_range_B_refined 2.632 r_long_range_B_other 2.631 r_mcangle_it 1.459 r_mcangle_other 1.459 r_angle_refined_deg 1.068 r_scangle_other 1.013 r_angle_other_deg 0.869 r_mcbond_it 0.79 r_mcbond_other 0.79 r_scbond_it 0.523 r_scbond_other 0.523 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10826 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing