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SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.5 mM RNA (29-MER) 90% H2O/10% D2O 0 7 1 atm 298 Agilent VNMRS 600 4 2D DQF-COSY 0.5 mM RNA (29-MER) 100% D2O 0 7 1 atm 298 Agilent VNMRS 600 5 2D 1H-1H TOCSY 0.5 mM RNA (29-MER) 100% D2O 0 7 1 atm 298 Agilent VNMRS 600 2 2D 1H-15N HSQC 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) 100% D2O 0 7 1 atm 273 Agilent VNMRS 600 3 2D 1H-13C HSQC 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) 100% D2O 0 7 1 atm 298 Agilent VNMRS 600 6 2D HCN 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) 100% D2O 0 7 1 atm 298 Agilent VNMRS 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent VNMRS 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR Varian 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment Sparky Goddard 4 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman