5LSN
SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.5 mM RNA (29-MER) | 90% H2O/10% D2O | 0 | 7 | 1 atm | 298 | Agilent VNMRS 600 |
4 | 2D DQF-COSY | 0.5 mM RNA (29-MER) | 100% D2O | 0 | 7 | 1 atm | 298 | Agilent VNMRS 600 |
5 | 2D 1H-1H TOCSY | 0.5 mM RNA (29-MER) | 100% D2O | 0 | 7 | 1 atm | 298 | Agilent VNMRS 600 |
2 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) | 100% D2O | 0 | 7 | 1 atm | 273 | Agilent VNMRS 600 |
3 | 2D 1H-13C HSQC | 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) | 100% D2O | 0 | 7 | 1 atm | 298 | Agilent VNMRS 600 |
6 | 2D HCN | 0.5 mM [U-99% 13C; U-99% 15N] RNA (29-MER) | 100% D2O | 0 | 7 | 1 atm | 298 | Agilent VNMRS 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | VNMRS | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |