X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3I3Japo-p300 (pdb 3I3J)

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION6.5277PEG 3350, NaCl
Crystal Properties
Matthews coefficientSolvent content
2.7154.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.6α = 90
b = 61.04β = 98.31
c = 135.68γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2013-11-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7841.5299.90.130.99774.8104124
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8199.82.9863.4471.6820.1683.95094

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTapo-p300 (pdb 3I3J)2.141.5260323310799.890.17780.17640.2029RANDOM41.958
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.750.961.08-2.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.423
r_dihedral_angle_3_deg17.577
r_dihedral_angle_4_deg14.877
r_dihedral_angle_1_deg5.04
r_mcangle_it1.402
r_angle_refined_deg1.301
r_mcbond_it0.889
r_mcbond_other0.889
r_angle_other_deg0.783
r_chiral_restr0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.423
r_dihedral_angle_3_deg17.577
r_dihedral_angle_4_deg14.877
r_dihedral_angle_1_deg5.04
r_mcangle_it1.402
r_angle_refined_deg1.301
r_mcbond_it0.889
r_mcbond_other0.889
r_angle_other_deg0.783
r_chiral_restr0.07
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6722
Nucleic Acid Atoms
Solvent Atoms483
Heterogen Atoms268

Software

Software
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction