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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 Tris pH 8.5, 0.2M Li2SO4, 20% v/v PEG400 at 20C
Crystal Properties Matthews coefficient Solvent content 2.15 42.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.52 α = 90 b = 44.28 β = 90 c = 78.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97565 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 44.28 92.7 0.052 15.8 5.6 39426
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.23 58.5 0.535 1.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.19 17.27 37417 1929 92.57 0.18762 0.1866 0.1948 0.2076 0.2145 RANDOM 17.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.57 -0.14 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.333 r_dihedral_angle_3_deg 11.048 r_dihedral_angle_4_deg 9.79 r_dihedral_angle_1_deg 4.788 r_long_range_B_refined 4.654 r_long_range_B_other 4.255 r_scangle_other 1.413 r_mcangle_it 1.046 r_mcangle_other 1.046 r_angle_refined_deg 0.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.333 r_dihedral_angle_3_deg 11.048 r_dihedral_angle_4_deg 9.79 r_dihedral_angle_1_deg 4.788 r_long_range_B_refined 4.654 r_long_range_B_other 4.255 r_scangle_other 1.413 r_mcangle_it 1.046 r_mcangle_other 1.046 r_angle_refined_deg 0.982 r_scbond_it 0.819 r_scbond_other 0.818 r_angle_other_deg 0.804 r_mcbond_it 0.601 r_mcbond_other 0.601 r_chiral_restr 0.058 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1062 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling