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Lysozyme, collected at rotation 1 degree per second
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DPX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 30% w/v Polyethylene glycol monomethyl ether 5,000,
1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
Crystal Properties Matthews coefficient Solvent content 1.96 37.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.977 α = 90 b = 77.977 β = 90 c = 36.949 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2014-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.496 55.14 99.5 0.069 23.8 13.21 18845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DPX 1.496 55.14 17912 933 99.46 0.1844 0.18191 0.1919 0.23343 0.2382 RANDOM 19.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.34 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_3_deg 13.089 r_dihedral_angle_4_deg 11.307 r_long_range_B_refined 8.171 r_long_range_B_other 7.454 r_dihedral_angle_1_deg 6.428 r_scangle_other 4.074 r_scbond_it 2.705 r_scbond_other 2.702 r_mcangle_it 2.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_3_deg 13.089 r_dihedral_angle_4_deg 11.307 r_long_range_B_refined 8.171 r_long_range_B_other 7.454 r_dihedral_angle_1_deg 6.428 r_scangle_other 4.074 r_scbond_it 2.705 r_scbond_other 2.702 r_mcangle_it 2.146 r_mcangle_other 2.145 r_angle_refined_deg 2.054 r_mcbond_it 1.522 r_mcbond_other 1.521 r_angle_other_deg 1.173 r_chiral_restr 0.136 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 998 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing