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70S ribosome from Staphylococcus aureus
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.669 f_angle_d 1.183 f_chiral_restr 0.055 f_bond_d 0.011 f_plane_restr 0.006
Sample 70S ribosome from Staphylococcus aureus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blot force 5, blot waiting time 30 s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 110000 Reported Resolution (Å) 3.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DARK FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Xmipp 3 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4 MODEL FITTING VMD 1.9.2 MODEL FITTING NAMD 2 MODEL REFINEMENT PHENIX 1.10.1-2155 MODEL REFINEMENT PHENIX dev-2341 MODEL REFINEMENT ERRASER 1.10.1-2155 INITIAL EULER ASSIGNMENT RELION 1.3 FINAL EULER ASSIGNMENT RELION 1.3 CLASSIFICATION RELION 1.3 RECONSTRUCTION RELION 1.3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 423497