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Room temperature X-ray diffraction of tetragonal HEWL. First data set (0.31 MGy)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 291 Protein: 40-80 mg/ml of protein in 200mM NaAcetate pH 4.7
Crystallization condition: 200mM NaAcetate pH 4.7, 10% NaCl
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.244 α = 90 b = 79.244 β = 90 c = 37.896 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M kb mirrors 2015-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979268 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 39.62 99.7 0.063 0.994 19.3 5.8 19825 13.765
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 98.6 0.217 6.3 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1BWH 1.5 20 18556 930 97.95 0.11341 0.11099 0.1107 0.16196 0.1609 RANDOM 21.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.1 0.2
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.27 r_dihedral_angle_2_deg 35.754 r_dihedral_angle_4_deg 21.725 r_dihedral_angle_3_deg 14.094 r_sphericity_bonded 13.933 r_scangle_other 6.714 r_dihedral_angle_1_deg 6.081 r_scbond_it 6.034 r_scbond_other 6.028 r_long_range_B_refined 5.634
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.27 r_dihedral_angle_2_deg 35.754 r_dihedral_angle_4_deg 21.725 r_dihedral_angle_3_deg 14.094 r_sphericity_bonded 13.933 r_scangle_other 6.714 r_dihedral_angle_1_deg 6.081 r_scbond_it 6.034 r_scbond_other 6.028 r_long_range_B_refined 5.634 r_long_range_B_other 5.469 r_rigid_bond_restr 5.289 r_mcangle_other 3.033 r_mcangle_it 3.011 r_mcbond_it 2.529 r_mcbond_other 2.432 r_angle_refined_deg 2.317 r_angle_other_deg 1.269 r_chiral_restr 0.163 r_bond_refined_d 0.028 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling