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Streptococcal surface adhesin - CshA NR2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291.15 0.2 M Na/K tartrate, MMT buffer [DL-malic acid, MES and Tris base in the molar ratios 1:2:2] (pH 5.0), 22% PEG 3350.
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.929 α = 90 b = 173.929 β = 90 c = 104.071 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 61.01 100 0.107 19.8 16.8 27284
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.8 100 1.477 2.1 16.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.66 61.01 25890 1368 99.97 0.20435 0.20131 0.2078 0.26353 0.2641 RANDOM 66.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.21 -0.6 -1.21 3.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.814 r_dihedral_angle_4_deg 19.241 r_dihedral_angle_3_deg 18.143 r_long_range_B_refined 11.397 r_long_range_B_other 11.396 r_scangle_other 8.761 r_dihedral_angle_1_deg 8.576 r_mcangle_it 8.107 r_mcangle_other 8.106 r_scbond_it 5.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.814 r_dihedral_angle_4_deg 19.241 r_dihedral_angle_3_deg 18.143 r_long_range_B_refined 11.397 r_long_range_B_other 11.396 r_scangle_other 8.761 r_dihedral_angle_1_deg 8.576 r_mcangle_it 8.107 r_mcangle_other 8.106 r_scbond_it 5.867 r_scbond_other 5.866 r_mcbond_it 5.479 r_mcbond_other 5.429 r_angle_refined_deg 1.826 r_angle_other_deg 0.867 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3647 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing