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Hen Egg White Lysozyme at 278K, Data set 10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BLX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 291 CRYSTALS WERE GROWN BY MIXING EQUAL VOLUMES OF WELL SOLUTION (1.0 M SODIUM CHLORIDE, 50 MM SODIUM ACETATE PH 4.5) AND PROTEIN (40-60 MG/ML)
Crystal Properties Matthews coefficient Solvent content 2.07 40.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.161 α = 90 b = 79.161 β = 90 c = 37.955 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 278 CCD MARMOSAIC 325 mm CCD 2013-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.21549 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.198 31.414 93.7 0.134 0.156 0.077 6.1 3.5 35794 35794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 85.8 4.035 4.035 4.773 2.464 0.2 3 4719
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2BLX 1.2 31.414 30295 1610 83.07 0.1841 0.1823 0.1917 0.2183 0.2226 RANDOM 17.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.236 r_dihedral_angle_4_deg 16.188 r_dihedral_angle_3_deg 13.643 r_dihedral_angle_1_deg 6.784 r_mcangle_it 2.437 r_angle_refined_deg 2.031 r_mcbond_it 1.588 r_mcbond_other 1.541 r_angle_other_deg 1.125 r_chiral_restr 0.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.236 r_dihedral_angle_4_deg 16.188 r_dihedral_angle_3_deg 13.643 r_dihedral_angle_1_deg 6.784 r_mcangle_it 2.437 r_angle_refined_deg 2.031 r_mcbond_it 1.588 r_mcbond_other 1.541 r_angle_other_deg 1.125 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PDB_EXTRACT data extraction