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The structure of Arabidopsis thaliana FUT1 in complex with GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 7 mg/mL protein in 0.1 M MES pH 6.0 to 7.0 and 16% to 23% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.933 α = 90 b = 113.103 β = 105.01 c = 87.781 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 Helios mirrors 2014-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54188
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 84.78 99.8 0.1343 6.3 5.11 79818
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.7 0.5897 1.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 84.78 74433 3790 97.78 0.22583 0.22262 0.2266 0.28882 0.2914 RANDOM 26.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 -0.27 -1.61 2.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.412 r_dihedral_angle_4_deg 17.897 r_dihedral_angle_3_deg 16.428 r_long_range_B_refined 7.608 r_long_range_B_other 7.49 r_dihedral_angle_1_deg 7.321 r_angle_refined_deg 2.175 r_mcangle_it 1.754 r_mcangle_other 1.754 r_scangle_other 1.669
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.412 r_dihedral_angle_4_deg 17.897 r_dihedral_angle_3_deg 16.428 r_long_range_B_refined 7.608 r_long_range_B_other 7.49 r_dihedral_angle_1_deg 7.321 r_angle_refined_deg 2.175 r_mcangle_it 1.754 r_mcangle_other 1.754 r_scangle_other 1.669 r_angle_other_deg 1.415 r_scbond_it 1.056 r_scbond_other 1.055 r_mcbond_it 0.993 r_mcbond_other 0.993 r_chiral_restr 0.147 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7183 Nucleic Acid Atoms Solvent Atoms 1032 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling MOLREP phasing