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expanded poliovirus in complex with VHH 7A
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.833 r_dihedral_angle_3_deg 9.605 r_dihedral_angle_4_deg 8.187 r_angle_refined_deg 2.204 r_dihedral_angle_1_deg 1.778 r_chiral_restr 0.164 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.833 r_dihedral_angle_3_deg 9.605 r_dihedral_angle_4_deg 8.187 r_angle_refined_deg 2.204 r_dihedral_angle_1_deg 1.778 r_chiral_restr 0.164 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample expanded poliovirus in complex with VHH 7A
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 17654 Reported Resolution (Å) 5.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details Fitting protocol: rigid body restraint of structurally conserved areas, and stereochemically restrained, icosahedrally restrained flexible fitting of ... Fitting protocol: rigid body restraint of structurally conserved areas, and stereochemically restrained, icosahedrally restrained flexible fitting of areas that would otherwise disagree with the map. Refinement space: reciprocal, using both Fourier amplitudes and
phases.
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION e2boxer.py IMAGE ACQUISITION SerialEM MODEL FITTING Coot OTHER Coot INITIAL EULER ASSIGNMENT RELION 1.3 FINAL EULER ASSIGNMENT FREALIGN 9 CLASSIFICATION Relion 1.3 RECONSTRUCTION GeFrealign CTF CORRECTION CTFFIND3 MODEL REFINEMENT REFMAC 5.8.0124 5 RECONSTRUCTION FREALIGN 9.09
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION