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Synechocystis apocarotenoid oxygenase (ACO) mutant - Glu150Asp
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 BisTris Propane, sodium polyacrylate 2100, sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.78 55.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.42 α = 90 b = 124.95 β = 90 c = 203.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2016-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-E 0.97910 APS 21-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 48.58 99.9 7.9 8.1 74574
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4OU9 2.81 48.58 70990 99.71 0.20319 0.20169 0.2072 0.23334 0.2366 USED AS IN 4OU9 72.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.811 r_dihedral_angle_4_deg 17.143 r_dihedral_angle_3_deg 13.934 r_mcangle_it 7.719 r_dihedral_angle_1_deg 6.179 r_mcbond_it 4.855 r_mcbond_other 4.854 r_angle_refined_deg 1.331 r_angle_other_deg 1.106 r_chiral_restr 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.811 r_dihedral_angle_4_deg 17.143 r_dihedral_angle_3_deg 13.934 r_mcangle_it 7.719 r_dihedral_angle_1_deg 6.179 r_mcbond_it 4.855 r_mcbond_other 4.854 r_angle_refined_deg 1.331 r_angle_other_deg 1.106 r_chiral_restr 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18835 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing