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Wolinella succinogenes L-asparaginase S121 + L-Glutamic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 283 PEG2000 + HEPES 7.5
Crystal Properties Matthews coefficient Solvent content 2.14 42.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.538 α = 87.22 b = 84.181 β = 77.76 c = 120.547 γ = 70.84
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-06-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 30 94.4 0.054 0.998 11.85 1.98 148378 -3 35.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.11 92.6 0.494 1.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WSA 2 30 139793 7436 94.5 0.183 0.181 0.1877 0.2202 0.225 RANDOM 36.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.12 -0.76 -1.17 -0.04 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.962 r_dihedral_angle_4_deg 17.481 r_dihedral_angle_3_deg 14.869 r_dihedral_angle_1_deg 7.028 r_mcangle_it 3.987 r_mcbond_it 2.801 r_mcbond_other 2.8 r_angle_refined_deg 1.583 r_angle_other_deg 1.449 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.962 r_dihedral_angle_4_deg 17.481 r_dihedral_angle_3_deg 14.869 r_dihedral_angle_1_deg 7.028 r_mcangle_it 3.987 r_mcbond_it 2.801 r_mcbond_other 2.8 r_angle_refined_deg 1.583 r_angle_other_deg 1.449 r_chiral_restr 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19163 Nucleic Acid Atoms Solvent Atoms 1567 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement XDS data reduction Coot model building MOLREP phasing XDS data scaling