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Crystal structure of M. tuberculosis UspC (monoclinic crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 Precipitant mix: 25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350
Halogen mix: 0.3M Sodium fluoride; 0.3M Sodium bromide; 0.3M Sodium iodide
Buffer: 1.0 M Imidazole; MES monohydrate (acid)
Crystal Properties Matthews coefficient Solvent content 2.33 47.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.99 α = 90 b = 52.35 β = 90.88 c = 87.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 87.9 99.6 0.113 0.113 14.3 7.3 30838 38.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.47 95.2 0.664 2.3 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.41 87.88 29276 1551 99.53 0.2054 0.2025 0.2025 0.2607 0.2608 RANDOM 34.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.48 -0.01 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.694 r_dihedral_angle_4_deg 21.55 r_dihedral_angle_3_deg 15.507 r_dihedral_angle_1_deg 6.614 r_mcangle_it 1.818 r_angle_refined_deg 1.744 r_mcbond_it 1.031 r_scbond_it 0.984 r_chiral_restr 0.123 r_bond_refined_d 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.694 r_dihedral_angle_4_deg 21.55 r_dihedral_angle_3_deg 15.507 r_dihedral_angle_1_deg 6.614 r_mcangle_it 1.818 r_angle_refined_deg 1.744 r_mcbond_it 1.031 r_scbond_it 0.984 r_chiral_restr 0.123 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5878 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling SHARP phasing