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Crytsal structure of Wss1 from S. pombe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 100 mM Tris/HCl, 20% PEG 1000
Crystal Properties Matthews coefficient Solvent content 2.04 39.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.3 α = 90 b = 41.3 β = 90 c = 68.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2009-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.8 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 30 98.7 0.059 21 8.8 61720
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.1 99.7 0.399 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1 8 58634 3086 98.71 0.14265 0.14136 0.145 0.16724 0.1721 RANDOM 11.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.62 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.97 r_sphericity_free 28.881 r_dihedral_angle_4_deg 16.133 r_dihedral_angle_3_deg 10.587 r_sphericity_bonded 8.526 r_rigid_bond_restr 5.732 r_dihedral_angle_1_deg 5.312 r_long_range_B_refined 2.943 r_long_range_B_other 2.616 r_scangle_other 2.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.97 r_sphericity_free 28.881 r_dihedral_angle_4_deg 16.133 r_dihedral_angle_3_deg 10.587 r_sphericity_bonded 8.526 r_rigid_bond_restr 5.732 r_dihedral_angle_1_deg 5.312 r_long_range_B_refined 2.943 r_long_range_B_other 2.616 r_scangle_other 2.142 r_scbond_it 1.966 r_scbond_other 1.966 r_angle_refined_deg 1.913 r_mcangle_other 1.331 r_mcangle_it 1.321 r_mcbond_it 1.07 r_mcbond_other 1.061 r_angle_other_deg 0.905 r_chiral_restr 0.124 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing