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The Crystal Structure of the Saccharomyces cerevisiae Co-Chaperone Cpr7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 289 12% (w/v) PEG 8000, 0.1M Ca acetate, 0.1M Na cacodylate, pH 5.5
Crystal Properties Matthews coefficient Solvent content 3.13 60.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.332 α = 90 b = 75.332 β = 90 c = 100.794 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9792 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 98.4 0.149 6.7 3.7 51730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IHG 1.8 41.92 48023 2574 97.86 0.18597 0.1846 0.1921 0.21082 0.2145 RANDOM 31.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 0.24 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_4_deg 16.986 r_dihedral_angle_3_deg 14.611 r_long_range_B_refined 6.305 r_dihedral_angle_1_deg 6.226 r_long_range_B_other 6.027 r_scangle_other 4.098 r_angle_other_deg 3.654 r_mcangle_it 3.079 r_mcangle_other 3.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_4_deg 16.986 r_dihedral_angle_3_deg 14.611 r_long_range_B_refined 6.305 r_dihedral_angle_1_deg 6.226 r_long_range_B_other 6.027 r_scangle_other 4.098 r_angle_other_deg 3.654 r_mcangle_it 3.079 r_mcangle_other 3.078 r_scbond_it 2.581 r_scbond_other 2.58 r_mcbond_it 1.909 r_mcbond_other 1.906 r_angle_refined_deg 1.463 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3098 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing