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A simplified BPTI variant containing 24 alanines out of 58 residues
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3AUB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 PEG 4000, LITHIUM SULFATE, TRIS-HCL
Crystal Properties Matthews coefficient Solvent content 2.78 55.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.246 α = 90 b = 100.022 β = 90 c = 61.903 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 1 2010-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.00 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.7 0.068 0.068 9.8 3.4 20200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.7 0.269 4.99 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3AUB 1.9 27.45 14745 779 99.9 0.168 0.164 0.1762 0.235 0.236 RANDOM 20.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.855 r_dihedral_angle_4_deg 13.279 r_dihedral_angle_3_deg 11.337 r_dihedral_angle_1_deg 6.659 r_long_range_B_refined 5.629 r_long_range_B_other 4.809 r_scangle_other 2.95 r_mcangle_other 2.618 r_mcangle_it 2.616 r_scbond_it 2.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.855 r_dihedral_angle_4_deg 13.279 r_dihedral_angle_3_deg 11.337 r_dihedral_angle_1_deg 6.659 r_long_range_B_refined 5.629 r_long_range_B_other 4.809 r_scangle_other 2.95 r_mcangle_other 2.618 r_mcangle_it 2.616 r_scbond_it 2.282 r_scbond_other 1.995 r_angle_refined_deg 1.811 r_mcbond_it 1.718 r_mcbond_other 1.711 r_angle_other_deg 0.837 r_chiral_restr 0.106 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1194 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms 25
Software Software Software Name Purpose DENZO data reduction SCALA data scaling HKL-2000 phasing REFMAC refinement