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Crystal structure of GLIC in complex with DHA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HFI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 277 225 mM ammonium sulfate, 50 mM sodium acetate pH 4.0, 7.5-10% PEG 4000
Crystal Properties Matthews coefficient Solvent content 5.31 76.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.868 α = 90 b = 133.32 β = 102.36 c = 159.919 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2015-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9787 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 61.31 96.7 6.7 2.8 64340
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.34 98.6 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HFI 3.25 30 53760 2903 96.32 0.2331 0.2315 0.2443 0.2611 0.2712 RANDOM 100.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.09 -14.24 5.42 -2.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.892 r_dihedral_angle_3_deg 19.029 r_dihedral_angle_4_deg 18.676 r_mcangle_it 11.411 r_dihedral_angle_1_deg 7.886 r_mcbond_it 7.255 r_mcbond_other 7.25 r_angle_refined_deg 1.801 r_angle_other_deg 1.445 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.892 r_dihedral_angle_3_deg 19.029 r_dihedral_angle_4_deg 18.676 r_mcangle_it 11.411 r_dihedral_angle_1_deg 7.886 r_mcbond_it 7.255 r_mcbond_other 7.25 r_angle_refined_deg 1.801 r_angle_other_deg 1.445 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12625 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 202
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing