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RORgamma in complex with agonist BIO592 and Coactivator EBI96
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 0.1M HEPES pH 8.0
0.2M NaCl
25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.672 α = 90 b = 68.111 β = 109.9 c = 96.056 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.635 80.558 99.6 9.9 2.63 31077
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LOL 2.635 80.558 29379 1557 99.58 0.2023 0.1994 0.2553 0.2266 RANDOM 33.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.02 -0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_4_deg 20.323 r_dihedral_angle_3_deg 17.455 r_dihedral_angle_1_deg 5.687 r_mcangle_it 3.077 r_mcbond_it 1.906 r_mcbond_other 1.905 r_angle_refined_deg 1.655 r_angle_other_deg 1.099 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.096 r_dihedral_angle_4_deg 20.323 r_dihedral_angle_3_deg 17.455 r_dihedral_angle_1_deg 5.687 r_mcangle_it 3.077 r_mcbond_it 1.906 r_mcbond_other 1.905 r_angle_refined_deg 1.655 r_angle_other_deg 1.099 r_chiral_restr 0.116 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8239 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 143
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing