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Human Casein Kinase 1 isoform delta apo (kinase domain)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UYS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 277.15 0.1 M Li2SO4, 0.7 - 0.8 M Na-K tartrate, 0.1 M CHES (pH 9.5)
Crystal Properties Matthews coefficient Solvent content 2.79 55.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.999 α = 90 b = 64.999 β = 90 c = 152.881 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.916 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45 97.9 0.116 0.999 19.16 16.7 29688 -3 30.422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 81.3 0.869 4.14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3uys 1.9 45 27925 1456 96.84 0.1927 0.1909 0.2008 0.2267 0.2317 RANDOM 38.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.44 0.89 -2.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.439 r_dihedral_angle_3_deg 16.324 r_dihedral_angle_4_deg 15.571 r_dihedral_angle_1_deg 6.688 r_mcangle_it 5.104 r_mcbond_it 3.413 r_mcbond_other 3.408 r_angle_refined_deg 2.061 r_angle_other_deg 1.14 r_chiral_restr 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.439 r_dihedral_angle_3_deg 16.324 r_dihedral_angle_4_deg 15.571 r_dihedral_angle_1_deg 6.688 r_mcangle_it 5.104 r_mcbond_it 3.413 r_mcbond_other 3.408 r_angle_refined_deg 2.061 r_angle_other_deg 1.14 r_chiral_restr 0.123 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2350 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing