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Crystal structure of CGL1 from Crassostrea gigas, mannose-bound form (CGL1/MAN)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 0.2 M magnesium acetate, 0.1 M sodium cacodylate, 20% PEG8000
Crystal Properties Matthews coefficient Solvent content 2.03 39.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.723 α = 90 b = 58.778 β = 93.72 c = 108.46 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2013-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.9800 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 79.6 17 3.9 160510
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.1 17.87 152237 8117 79.46 0.16705 0.1641 0.1655 0.22207 0.2231 RANDOM 24.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.04 -0.05 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_sphericity_free 24.393 r_dihedral_angle_3_deg 12.689 r_dihedral_angle_4_deg 11.05 r_sphericity_bonded 9.368 r_dihedral_angle_1_deg 7.46 r_rigid_bond_restr 6.693 r_long_range_B_refined 3.426 r_scangle_other 3.176 r_scbond_it 3.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.149 r_sphericity_free 24.393 r_dihedral_angle_3_deg 12.689 r_dihedral_angle_4_deg 11.05 r_sphericity_bonded 9.368 r_dihedral_angle_1_deg 7.46 r_rigid_bond_restr 6.693 r_long_range_B_refined 3.426 r_scangle_other 3.176 r_scbond_it 3.124 r_scbond_other 3.124 r_long_range_B_other 2.985 r_angle_refined_deg 2.447 r_angle_other_deg 2.35 r_mcangle_it 1.903 r_mcangle_other 1.903 r_mcbond_it 1.747 r_mcbond_other 1.746 r_chiral_restr 0.195 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_gen_planes_other 0.01 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4360 Nucleic Acid Atoms Solvent Atoms 713 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling