5I2U

Crystal structure of a novel Halo-Tolerant Cellulase from Soil Metagenome


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1M TRIS, 25% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.136.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.766α = 90
b = 88.128β = 90
c = 146.47γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2014-05-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.542

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.245.7798.30.07815.9630246-336.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.27880.4572.75.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3PZT2.245.7728609156798.190.211460.208950.25706RANDOM38.151
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.661.24-3.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.698
r_dihedral_angle_3_deg13.523
r_dihedral_angle_4_deg12.344
r_long_range_B_refined6.676
r_long_range_B_other6.676
r_dihedral_angle_1_deg6.136
r_scangle_other4.199
r_mcangle_it3.541
r_mcangle_other3.541
r_scbond_it2.797
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.698
r_dihedral_angle_3_deg13.523
r_dihedral_angle_4_deg12.344
r_long_range_B_refined6.676
r_long_range_B_other6.676
r_dihedral_angle_1_deg6.136
r_scangle_other4.199
r_mcangle_it3.541
r_mcangle_other3.541
r_scbond_it2.797
r_scbond_other2.741
r_mcbond_it2.414
r_mcbond_other2.408
r_angle_refined_deg1.295
r_angle_other_deg1.054
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.004
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4783
Nucleic Acid Atoms
Solvent Atoms134
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing