X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5298PEG 4000, potassium chloride, magnesium chloride, Tris-HCl
Crystal Properties
Matthews coefficientSolvent content
3.7767.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.664α = 90
b = 69.821β = 90.3
c = 149.298γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2014-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.0332APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8588.66399.60.1327.16.323364
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.852.999.66.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.8888.66339727170098.920.183650.181750.22811RANDOM72.823
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.520.561.090.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.694
r_dihedral_angle_4_deg18.056
r_dihedral_angle_3_deg17.107
r_long_range_B_refined9.429
r_long_range_B_other9.428
r_scangle_other7.171
r_dihedral_angle_1_deg6.899
r_mcangle_it5.738
r_mcangle_other5.737
r_scbond_it4.978
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.694
r_dihedral_angle_4_deg18.056
r_dihedral_angle_3_deg17.107
r_long_range_B_refined9.429
r_long_range_B_other9.428
r_scangle_other7.171
r_dihedral_angle_1_deg6.899
r_mcangle_it5.738
r_mcangle_other5.737
r_scbond_it4.978
r_scbond_other4.977
r_mcbond_it3.824
r_mcbond_other3.824
r_angle_refined_deg1.695
r_angle_other_deg1.178
r_chiral_restr0.094
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5572
Nucleic Acid Atoms2845
Solvent Atoms46
Heterogen Atoms76

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing