X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5F44 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2770.1M sodium thiocynate, 15% PEG3350
Crystal Properties
Matthews coefficientSolvent content
4.0369.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 223.95α = 90
b = 63.488β = 94.99
c = 104.453γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2015-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM140.95372ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.47111.883.530.089460.0994317.36544441
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.4662.55427.020.3473.844

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5F442.47111.842201224083.460.20130.200450.2168RANDOM24.418
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.070.56-3.212.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.889
r_dihedral_angle_3_deg13.48
r_dihedral_angle_4_deg11.632
r_long_range_B_refined8.217
r_long_range_B_other8.217
r_scangle_other7.396
r_scbond_it6.699
r_scbond_other6.699
r_dihedral_angle_1_deg5.74
r_mcangle_other3.491
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.889
r_dihedral_angle_3_deg13.48
r_dihedral_angle_4_deg11.632
r_long_range_B_refined8.217
r_long_range_B_other8.217
r_scangle_other7.396
r_scbond_it6.699
r_scbond_other6.699
r_dihedral_angle_1_deg5.74
r_mcangle_other3.491
r_mcangle_it3.489
r_mcbond_it3.245
r_mcbond_other3.211
r_angle_refined_deg1.1
r_angle_other_deg0.853
r_chiral_restr0.06
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.003
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6049
Nucleic Acid Atoms
Solvent Atoms286
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data processing
MOLREPphasing
Cootmodel building