☰ Navigation Tabs
Crystal structure of ENZbleach xylanase A74C+G84C mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GV1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8 298 PEG 3350, 0.2 M NH4Cl
Crystal Properties Matthews coefficient Solvent content 2.27 45.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.594 α = 90 b = 83.506 β = 96.52 c = 79.526 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Nonius Kappa CCD 2014-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 30 99.6 0.077 9.5 3.8 41799
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.01 96.9 0.268 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5GV1 1.94 30 39679 2100 99.66 0.1887 0.1862 0.1865 0.2331 0.2341 RANDOM 13.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.1 -0.81 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.056 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_4_deg 12.152 r_dihedral_angle_1_deg 6.903 r_angle_refined_deg 1.384 r_mcangle_it 1.33 r_scbond_it 0.886 r_mcbond_it 0.764 r_chiral_restr 0.093 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.056 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_4_deg 12.152 r_dihedral_angle_1_deg 6.903 r_angle_refined_deg 1.384 r_mcangle_it 1.33 r_scbond_it 0.886 r_mcbond_it 0.764 r_chiral_restr 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4352 Nucleic Acid Atoms Solvent Atoms 788 Heterogen Atoms
Software Software Software Name Purpose DENZO data collection HKL-2000 data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction