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Crystal structure of Au(M).CL-apo-E45C/R52C-rHLFr
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Ammonium Sulphate, Cadmium Sulphate
Crystal Properties Matthews coefficient Solvent content 3.12 60.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.079 α = 90 b = 181.079 β = 90 c = 181.079 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 1.03895 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 30 99.9 60.7 11.5 14946
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DAT 2.12 25.36 14079 758 99.27 0.18755 0.18537 0.22863 0.2145 RANDOM 36.172
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.15 r_dihedral_angle_4_deg 23.288 r_dihedral_angle_3_deg 16.549 r_long_range_B_refined 8.652 r_long_range_B_other 8.62 r_scangle_other 7.608 r_dihedral_angle_1_deg 5.73 r_scbond_it 5.062 r_scbond_other 5.038 r_mcangle_it 4.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.15 r_dihedral_angle_4_deg 23.288 r_dihedral_angle_3_deg 16.549 r_long_range_B_refined 8.652 r_long_range_B_other 8.62 r_scangle_other 7.608 r_dihedral_angle_1_deg 5.73 r_scbond_it 5.062 r_scbond_other 5.038 r_mcangle_it 4.302 r_mcangle_other 4.301 r_mcbond_other 3.194 r_mcbond_it 3.193 r_angle_refined_deg 1.845 r_angle_other_deg 1.126 r_chiral_restr 0.144 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1327 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling