☰ Navigation Tabs
Crystal structure of a glycoside hydrolase in complex with cellotetrose from Thielavia terrestris NRRL 8126
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OA7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 MgCl2, Tris-Cl, PEG4000
Crystal Properties Matthews coefficient Solvent content 2.52 51.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.342 α = 90 b = 54.793 β = 90 c = 84.839 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2016-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 25 99.7 0.045 30.6 5.3 31570
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 99.2 0.187 0.987 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OA7 1.58 25 29867 1622 99.65 0.1534 0.1519 0.165 0.18 0.1944 RANDOM 18.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.01 -0.79 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.068 r_dihedral_angle_3_deg 11.765 r_dihedral_angle_4_deg 8.066 r_dihedral_angle_1_deg 7.553 r_mcangle_it 2.674 r_mcbond_it 2.012 r_mcbond_other 2 r_angle_refined_deg 1.57 r_angle_other_deg 0.8 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.068 r_dihedral_angle_3_deg 11.765 r_dihedral_angle_4_deg 8.066 r_dihedral_angle_1_deg 7.553 r_mcangle_it 2.674 r_mcbond_it 2.012 r_mcbond_other 2 r_angle_refined_deg 1.57 r_angle_other_deg 0.8 r_chiral_restr 0.112 r_gen_planes_refined 0.015 r_bond_refined_d 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1562 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 79
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing