☰ Navigation Tabs
Structure of the human 26S proteasome bound to USP14-UbAl
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 60.556 r_long_range_B_other 60.556 r_scangle_other 40.995 r_mcangle_it 36.721 r_mcangle_other 36.72 r_dihedral_angle_2_deg 35.643 r_scbond_it 24.773 r_scbond_other 24.773 r_mcbond_it 22.714 r_mcbond_other 22.714
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 60.556 r_long_range_B_other 60.556 r_scangle_other 40.995 r_mcangle_it 36.721 r_mcangle_other 36.72 r_dihedral_angle_2_deg 35.643 r_scbond_it 24.773 r_scbond_other 24.773 r_mcbond_it 22.714 r_mcbond_other 22.714 r_dihedral_angle_4_deg 19.056 r_dihedral_angle_3_deg 18.733 r_dihedral_angle_1_deg 8.845 r_angle_refined_deg 1.768 r_angle_other_deg 0.973 r_chiral_restr 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample human 26S proteasome bound to USP14-UbAl
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blot for 2 seconds before plunging
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 141293 Reported Resolution (Å) 4.35 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 37
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Preliminary grid screening was performed manually
EM Software Task Software Package Version PARTICLE SELECTION RELION 1.4 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 3 MODEL FITTING Chimera 1.10.1 MODEL REFINEMENT REFMAC 4.5 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 CLASSIFICATION RELION 1.4 RECONSTRUCTION RELION 1.4
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 534096