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Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.7 293 1.7M sodium potassium phosphate, 20%(v/v) Glycerol as cryoprotectant
Crystal Properties Matthews coefficient Solvent content 3.85 68.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.96 α = 90 b = 132.37 β = 90 c = 142.68 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2008-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 53.7 99.6 0.109 0.997 11.8 5.3 14035
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.79 2.86 100 1.173 0.561 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2EVA 2.79 53.7 13351 684 99.61 0.2006 0.1984 0.2031 0.2451 0.2414 RANDOM 74.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.41 -2.36 7.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.402 r_dihedral_angle_4_deg 14.679 r_dihedral_angle_3_deg 14.38 r_dihedral_angle_1_deg 6.137 r_mcangle_it 5.431 r_mcbond_it 3.201 r_mcbond_other 3.189 r_angle_refined_deg 1.216 r_angle_other_deg 0.869 r_chiral_restr 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.402 r_dihedral_angle_4_deg 14.679 r_dihedral_angle_3_deg 14.38 r_dihedral_angle_1_deg 6.137 r_mcangle_it 5.431 r_mcbond_it 3.201 r_mcbond_other 3.189 r_angle_refined_deg 1.216 r_angle_other_deg 0.869 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2245 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 37
Software Software Software Name Purpose XDS data reduction Aimless data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction