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Transaminase W58L with SMBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION, RECRYSTALLIZATION 8 290 0.1M Tris-HCl pH8.0, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.37 48.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.02 α = 90 b = 102.04 β = 90 c = 116.83 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 76.85 99.11 0.129 17 13.8 60668
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 76.85 60668 3240 99.11 0.14505 0.14328 0.1497 0.17861 0.1867 RANDOM 10.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.455 r_dihedral_angle_4_deg 16.34 r_dihedral_angle_3_deg 12.158 r_long_range_B_refined 5.941 r_long_range_B_other 5.941 r_dihedral_angle_1_deg 5.851 r_scangle_other 5.156 r_scbond_it 3.605 r_scbond_other 3.605 r_mcangle_it 2.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.455 r_dihedral_angle_4_deg 16.34 r_dihedral_angle_3_deg 12.158 r_long_range_B_refined 5.941 r_long_range_B_other 5.941 r_dihedral_angle_1_deg 5.851 r_scangle_other 5.156 r_scbond_it 3.605 r_scbond_other 3.605 r_mcangle_it 2.588 r_mcangle_other 2.588 r_mcbond_it 1.981 r_mcbond_other 1.98 r_angle_other_deg 1.888 r_angle_refined_deg 1.252 r_chiral_restr 0.054 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6572 Nucleic Acid Atoms Solvent Atoms 936 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Aimless data scaling REFMAC phasing