X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5AEQPDB ENTRY 5AEQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.50.1 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.5, 18% V/V 2-PROPANOL, 16% W/V PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.3848

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.97α = 90
b = 50.97β = 90
c = 284.582γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMIRRORS2016-01-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4243.5698.80.0411.073.31573463.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.422.5999.90.621.83.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 5AEQ2.4247.431488677098.820.227660.225190.27685RANDOM78.609
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.56-1.28-2.568.29
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.431
r_dihedral_angle_3_deg17.349
r_dihedral_angle_4_deg17.27
r_long_range_B_refined8.803
r_long_range_B_other8.803
r_dihedral_angle_1_deg6.451
r_scbond_it3.324
r_scbond_other3.323
r_mcangle_it3.181
r_mcangle_other3.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.431
r_dihedral_angle_3_deg17.349
r_dihedral_angle_4_deg17.27
r_long_range_B_refined8.803
r_long_range_B_other8.803
r_dihedral_angle_1_deg6.451
r_scbond_it3.324
r_scbond_other3.323
r_mcangle_it3.181
r_mcangle_other3.18
r_scangle_other2.668
r_mcbond_other2.481
r_mcbond_it2.48
r_angle_refined_deg1.562
r_angle_other_deg1.044
r_chiral_restr0.092
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2972
Nucleic Acid Atoms
Solvent Atoms34
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing