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Type IV-like pilin TTHA1219 from Thermus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.01M ZINC CHLORIDE, 0.1M SODIUM ACETATE PH 5 AND 20% (W/V) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.45 49.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.4 α = 90 b = 66.95 β = 99.14 c = 97.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 35.94 99.3 0.08 12.6 3.3 70620 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 99.8 0.79 2.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.85 96.23 67037 3564 99.23 0.18173 0.18025 0.1884 0.20878 0.2161 RANDOM 27.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -1.09 0.33 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 16.021 r_dihedral_angle_3_deg 13.003 r_dihedral_angle_1_deg 6.384 r_mcangle_it 2.658 r_scbond_it 2.056 r_angle_refined_deg 1.843 r_angle_other_deg 1.665 r_mcbond_it 1.613 r_mcbond_other 1.612
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.905 r_dihedral_angle_4_deg 16.021 r_dihedral_angle_3_deg 13.003 r_dihedral_angle_1_deg 6.384 r_mcangle_it 2.658 r_scbond_it 2.056 r_angle_refined_deg 1.843 r_angle_other_deg 1.665 r_mcbond_it 1.613 r_mcbond_other 1.612 r_chiral_restr 0.101 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.011 r_gen_planes_other 0.009 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5708 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms
Software Software Software Name Purpose autoSHARP model building XDS data reduction XSCALE data scaling AutoSol phasing autoSHARP phasing REFMAC refinement