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Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ASJ PDB ENTRY 4ASJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 4% PEG 6000, 0.1 M MES PH6, 0.05 M MGCL2, 0.1 M NABR, 1% B-ME
Crystal Properties Matthews coefficient Solvent content 2.57 52.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.29 α = 90 b = 154.42 β = 92.3 c = 134.62 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 MIRRORS 2015-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 27.8 94.3 0.11 7 3.2 48194 2 15.13
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 94.4 0.39 3.5 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ASJ 2.4 134.512 48146 2407 94.068 0.245 0.2434 0.2479 0.2831 0.2866 RANDOM 32.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.607 -0.585 -0.554 -0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.409 r_dihedral_angle_4_deg 16.008 r_dihedral_angle_3_deg 15.92 r_dihedral_angle_1_deg 6.425 r_scangle_it 4.844 r_mcangle_it 4.485 r_scbond_it 3.052 r_mcbond_it 2.908 r_mcbond_other 2.908 r_angle_refined_deg 1.771
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.409 r_dihedral_angle_4_deg 16.008 r_dihedral_angle_3_deg 15.92 r_dihedral_angle_1_deg 6.425 r_scangle_it 4.844 r_mcangle_it 4.485 r_scbond_it 3.052 r_mcbond_it 2.908 r_mcbond_other 2.908 r_angle_refined_deg 1.771 r_angle_other_deg 1.578 r_nbd_other 0.229 r_nbd_refined 0.209 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.133 r_xyhbond_nbd_other 0.125 r_chiral_restr 0.093 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.009 r_gen_planes_other 0.008 r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9183 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing