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Wnt modulator Kremen in complex with DKK1 (CRD2) and LRP6 (PE3PE4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20 %W/V PEG3350 0.2 M NA/K-PHOSPHATE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.1 41.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.933 α = 90 b = 100.08 β = 90 c = 270.728 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2013-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 67.68 51.6 0.37 4.6 3.9 8070 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 3.5 135.36 7644 388 52.69 0.32284 0.32128 0.3247 0.35528 0.3535 RANDOM 58.615
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -15.63 32.79 -17.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.872 r_dihedral_angle_3_deg 12.941 r_dihedral_angle_4_deg 11.533 r_dihedral_angle_1_deg 5.033 r_angle_other_deg 3.79 r_mcangle_it 2.316 r_mcbond_it 1.285 r_mcbond_other 1.284 r_angle_refined_deg 0.998 r_scbond_it 0.981
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.872 r_dihedral_angle_3_deg 12.941 r_dihedral_angle_4_deg 11.533 r_dihedral_angle_1_deg 5.033 r_angle_other_deg 3.79 r_mcangle_it 2.316 r_mcbond_it 1.285 r_mcbond_other 1.284 r_angle_refined_deg 0.998 r_scbond_it 0.981 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7729 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling