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Wild type green fluorescent protein DendFP (Dendronephthya sp.)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M Mg formate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.384 α = 109.68 b = 106.397 β = 100.01 c = 137.209 γ = 101.72
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 50 97 0.033 0.046 0.033 13.5 2 310150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.84 90.6 0.244 0.345 0.244 0.809 1.9 14459
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.81 37.37 306888 3215 96.83 0.1828 0.1821 0.1907 0.2493 0.2561 RANDOM 22.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.12 0.04 -0.09 0.03 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.309 r_dihedral_angle_3_deg 18.344 r_dihedral_angle_4_deg 17.746 r_dihedral_angle_1_deg 8.411 r_angle_other_deg 3.844 r_mcangle_it 2.916 r_angle_refined_deg 2.224 r_mcbond_it 2.008 r_mcbond_other 2.008 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.309 r_dihedral_angle_3_deg 18.344 r_dihedral_angle_4_deg 17.746 r_dihedral_angle_1_deg 8.411 r_angle_other_deg 3.844 r_mcangle_it 2.916 r_angle_refined_deg 2.224 r_mcbond_it 2.008 r_mcbond_other 2.008 r_chiral_restr 0.132 r_bond_refined_d 0.021 r_gen_planes_other 0.02 r_gen_planes_refined 0.011 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29036 Nucleic Acid Atoms Solvent Atoms 1918 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing