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MBX3135 bound structure of bacterial efflux pump.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.1 M MES pH6.5, 0.21 M NaCl, 11.5% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.74 55.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.07 α = 90 b = 145.492 β = 90 c = 174.241 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.7 0.224 0.98 5.96 6.9 122939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.44 99.3 1.223 0.445 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 50 116922 6015 99.88 0.19623 0.19394 0.24091 0.2075 RANDOM 32.046
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5 -1.15 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.679 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_3_deg 15.393 r_long_range_B_refined 6.929 r_long_range_B_other 6.927 r_dihedral_angle_1_deg 6.544 r_scangle_other 5.057 r_mcangle_other 4.178 r_mcangle_it 4.177 r_scbond_it 3.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.679 r_dihedral_angle_4_deg 19.575 r_dihedral_angle_3_deg 15.393 r_long_range_B_refined 6.929 r_long_range_B_other 6.927 r_dihedral_angle_1_deg 6.544 r_scangle_other 5.057 r_mcangle_other 4.178 r_mcangle_it 4.177 r_scbond_it 3.09 r_scbond_other 3.09 r_mcbond_it 2.657 r_mcbond_other 2.651 r_angle_refined_deg 1.721 r_angle_other_deg 1.002 r_chiral_restr 0.094 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16876 Nucleic Acid Atoms Solvent Atoms 801 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing