☰ Navigation Tabs
The cap binding site of influenza virus protein PB2 as a drug target
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EG8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 10% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.96 37.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.133 α = 90 b = 109.01 β = 90.54 c = 39.655 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 87.7 0.071 0.097 0.066 13.1 1.8 11663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 92.6 0.194 0.267 0.183 0.909 1.7 641
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5EG8 2.3 20 11661 602 87.21 0.1945 0.1911 0.1985 0.258 0.2602 RANDOM 34.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.64 0.34 2.42 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.569 r_dihedral_angle_3_deg 17.597 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_1_deg 6.703 r_mcangle_it 4.015 r_mcbond_it 2.476 r_mcbond_other 2.458 r_angle_refined_deg 1.638 r_angle_other_deg 0.821 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.569 r_dihedral_angle_3_deg 17.597 r_dihedral_angle_4_deg 13.999 r_dihedral_angle_1_deg 6.703 r_mcangle_it 4.015 r_mcbond_it 2.476 r_mcbond_other 2.458 r_angle_refined_deg 1.638 r_angle_other_deg 0.821 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2453 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing