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High resolution crystal Structure of glucose complexed periplasmic glucose binding protein (ppGBP) from P. putida CSV86
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 295 0.1 M phosphate citrate buffer, 2 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.27 45.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.94 α = 90 b = 119.05 β = 90 c = 66.6 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9763 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 44.39 99.7 16.41 6.24 224933
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.35 99.2 2.71 5.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.25 40.76 213608 11245 99.68 0.12339 0.1219 0.1232 0.15153 0.1534 RANDOM 23.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.89 -0.07
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 35.352 r_dihedral_angle_2_deg 34.255 r_dihedral_angle_4_deg 22.164 r_sphericity_bonded 17.349 r_dihedral_angle_3_deg 11.744 r_dihedral_angle_1_deg 5.667 r_long_range_B_refined 5.464 r_long_range_B_other 4.757 r_scangle_other 4.228 r_scbond_it 3.603
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 35.352 r_dihedral_angle_2_deg 34.255 r_dihedral_angle_4_deg 22.164 r_sphericity_bonded 17.349 r_dihedral_angle_3_deg 11.744 r_dihedral_angle_1_deg 5.667 r_long_range_B_refined 5.464 r_long_range_B_other 4.757 r_scangle_other 4.228 r_scbond_it 3.603 r_scbond_other 3.585 r_mcangle_other 3.222 r_mcangle_it 3.22 r_rigid_bond_restr 3.184 r_mcbond_it 2.737 r_mcbond_other 2.721 r_angle_refined_deg 1.599 r_angle_other_deg 0.871 r_chiral_restr 0.101 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5952 Nucleic Acid Atoms Solvent Atoms 981 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing