☰ Navigation Tabs
Crystal Structure of EV71 3C Proteinase in complex with compound 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GHQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 100mM Tris, 25% PEG4000, 0.8M lithium chloride
Crystal Properties Matthews coefficient Solvent content 1.98 33.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.623 α = 90 b = 64.845 β = 90 c = 75.366 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2013-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.98 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 98.8 0.108 8.9 4.2 10155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 99.6 0.445 4 510
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4GHQ 2.05 45.77 9647 491 98.68 0.227 0.2237 0.2304 0.2943 0.287 RANDOM 25.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.88 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.159 r_dihedral_angle_3_deg 16.909 r_dihedral_angle_4_deg 15.063 r_dihedral_angle_1_deg 7.152 r_mcangle_it 3.378 r_mcbond_it 2.207 r_mcbond_other 2.179 r_angle_refined_deg 1.841 r_angle_other_deg 0.923 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.159 r_dihedral_angle_3_deg 16.909 r_dihedral_angle_4_deg 15.063 r_dihedral_angle_1_deg 7.152 r_mcangle_it 3.378 r_mcbond_it 2.207 r_mcbond_other 2.179 r_angle_refined_deg 1.841 r_angle_other_deg 0.923 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1401 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 11
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction