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Complex of Influenza M2e and Antibody
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DVB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 295 100 mM sodium acetate (pH 5.0), 2 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.52 51.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.64 α = 90 b = 101.44 β = 90 c = 212.49 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 1.000 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 97.1 0.07 11.8 3.4 50230
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 84.1 0.33 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DVB 2.2 49.21 47639 2494 98.05 0.1893 0.1866 0.1941 0.2403 0.2408 RANDOM 46.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.18 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.955 r_dihedral_angle_4_deg 18.074 r_dihedral_angle_3_deg 16.129 r_dihedral_angle_1_deg 7.711 r_mcangle_it 2.94 r_angle_refined_deg 2.264 r_mcbond_it 1.937 r_mcbond_other 1.937 r_angle_other_deg 1.58 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.955 r_dihedral_angle_4_deg 18.074 r_dihedral_angle_3_deg 16.129 r_dihedral_angle_1_deg 7.711 r_mcangle_it 2.94 r_angle_refined_deg 2.264 r_mcbond_it 1.937 r_mcbond_other 1.937 r_angle_other_deg 1.58 r_chiral_restr 0.136 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d 0.008 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6727 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing