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Thermobaculum terrenum O-GlcNAc transferase mutant - K341M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 12.5% poly[acrylic acid sodium salt] 2100, 0.5 M ammonium phosphate, 0.1 M strontium chloride
Crystal Properties Matthews coefficient Solvent content 3.45 64.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.188 α = 90 b = 216.361 β = 90 c = 216.406 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL PSI PILATUS 6M 2015-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 1.127 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 49 100 0.13 12.6 6.7 82234
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 8.85 99.9 0.69 2.5 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 49 78027 4119 99.9 0.2193 0.2179 0.1855 0.24568 0.2162 RANDOM 54.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 54.89 -27.68 -27.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.738 r_dihedral_angle_3_deg 18.209 r_dihedral_angle_4_deg 16.942 r_long_range_B_refined 7.955 r_long_range_B_other 7.815 r_dihedral_angle_1_deg 6.033 r_scangle_other 4.527 r_mcangle_it 4.349 r_mcangle_other 4.349 r_scbond_it 2.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.738 r_dihedral_angle_3_deg 18.209 r_dihedral_angle_4_deg 16.942 r_long_range_B_refined 7.955 r_long_range_B_other 7.815 r_dihedral_angle_1_deg 6.033 r_scangle_other 4.527 r_mcangle_it 4.349 r_mcangle_other 4.349 r_scbond_it 2.713 r_scbond_other 2.713 r_mcbond_it 2.638 r_mcbond_other 2.637 r_angle_refined_deg 1.366 r_angle_other_deg 1.002 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16368 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement SCALA data scaling SCALEPACK data scaling XDS data reduction